NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209349_1073062

Scaffold Ga0209349_1073062


Overview

Basic Information
Taxon OID3300025112 Open in IMG/M
Scaffold IDGa0209349_1073062 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1022
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013189Metagenome / Metatranscriptome273Y
F050757Metagenome / Metatranscriptome145Y
F100974Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209349_10730621F013189GAGMQEIEKNLKFVAQEHTLAKNVAEHLEKKYPGWLWAVHVMDGLAVVKSMRLSGNWGFVLHEDKIDNDYKAVTRAGGEILERYRQSTNGFNQTKYSDLV
Ga0209349_10730622F050757GAGMKKKDGTTEYSWSELAYRIDPELSAPEKVYVFDNGNRVFYQPRKRINVNHARNRKKS
Ga0209349_10730623F100974N/AIGRMYNFVITASTLTLTGKVPANGEGFVISPDNATLTLLQTFAWDNYGGTWADASTAWGDVAFAPSAVETGQNQPDAGSLTLSGSVPTFQLSQLWYVPSGSLSITGFVPSALEGFNFSPSAGSLTGFGGGTLWDDGTGNWTSHSEAWGLGTLSPTAGVTYTFVIDPQGNLVFTPYDPAWPQVGQPKYISEIIMS

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