Scaffold Ga0209349_1066596

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1066596
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1085
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005547	Metagenome	397	Y
F010950	Metagenome	297	Y
F018286	Metagenome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_10665962	F018286	AGGTGG	MTILTTFILVGMIDSYDTYFATVELNTTPASNGGPAMAVMPVSAFPCEIYEGKVFYVVKLHDEQDAVIVCQKEPQDESGRSGKD
Ga0209349_10665963	F010950	GGAG	MNIWVVRNTCLYSNETYLSTHITEKGALITAIRVVREDLTSGFDEDELEDMRPGMPHDPEEDLMQYGSDQLRHIVDDWWMYSMDINEHGQYEIHQTQVVA
Ga0209349_10665964	F005547	N/A	QKGCALACISDILEFHGIEDDETALSVMHNSYAYTDEEKKRQEATEPIEWDQEKLKEMTSEQLWKIFSDWCEISWDRMADRGYNLDANSVEIQA