Scaffold Ga0209349_1051223

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1051223
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1290
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021554	Metagenome / Metatranscriptome	218	N
F057437	Metagenome / Metatranscriptome	136	Y
F073651	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_10512231	F073651	N/A	EPDMSAQAYTISFNFAVGMKVSAHTSGNFKISDVQIICKQIGGGEGDFTYLNKIIDPGMTNMAGVGEQVAIINFSTTVSAKVFDKPITFQIKVNTDNATGTYQTGIIPLFCYLSAAVPKTWTTSSILMHLHADLAHAFPIFRDQDNMNMLDTGIGL
Ga0209349_10512232	F021554	AGG	MIIEEIPFFTEFVILGLVLGFGYGFTKLFLNHAKDKNRITRKEKKVETDNKLENELDKYLDNAPAIIHHLESEIANLKEKGSTPEQTQRLESELQQAKTLQKYEAPIRIFGKPLLKKAMSLIDNFKV
Ga0209349_10512233	F057437	AGG	MVAIQSAMMAREIGKRGTKVSGEFLEKKLGYNFVDLVTKLALFYVIAFLIAKYMEAIIYFQGGLSTIAGFFGIKMVQADQLPKQWVELFVDTNQQTYTSTPTGAGQFNPPGWDRPYDYGTPEHQEAEPYLFPEKEVKFKFWDLVN