Scaffold Ga0209349_1033295

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1033295
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1707
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014465	Metagenome	263	Y
F024106	Metagenome	207	Y
F029400	Metagenome	188	Y
F073421	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_10332951	F073421	N/A	PFLTLAVTQNKSAETLVFRDAAHFDRDYGGDKSWLIRWDHIKWYDSYECIQTLEKFIQEASDDEYEFEVDGKAQSSCEHIRFVRVGEESGDVEMSGDGFWDIYPTTHICY
Ga0209349_10332952	F014465	AGGA	MKTRGMIMIGALVRDCSKIMKIVTGYKCSQRGEYIQFAGDHQTAWYPLDSFEILSLEE
Ga0209349_10332953	F029400	GGA	MKIGDLVTFCPEAWGTPLEDRPLGIIMNVEKRWHPDGAMMVTAIFPGIPRNLRRCIKDFEVVNENW
Ga0209349_10332955	F024106	GGTGG	MKIGDLITPMEESTFHGSFQVGDLITLKHHPGAPIAIVTSLSASVFDRIMIQFFDTSRAEMAAPGHWKVVSRNENRRLGNL