NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209349_1028624

Scaffold Ga0209349_1028624


Overview

Basic Information
Taxon OID3300025112 Open in IMG/M
Scaffold IDGa0209349_1028624 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1884
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012783Metagenome277Y
F081437Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0209349_10286242F012783N/AMLNNNERDKMTKKYDHVDHMAVMSELLVLYQLKNETQDKINVANAKLDEIKELQKKKEENDDEIPF
Ga0209349_10286243F081437GAGGMMTKSPFKQAYFYIKYYATKHGCVIERKATIDDVCKQEFTAKGGYPCYNYVDVWATEKFGKTQYRTATHKWEFNDKQTLILQ

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