Scaffold Ga0209349_1019022

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1019022
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2459
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012401	Metagenome / Metatranscriptome	281	Y
F012463	Metagenome	280	Y
F014127	Metagenome	265	Y
F027156	Metagenome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_10190221	F014127	GGAGG	MQQRINNTLGRMMIAGDESSWDYGFLESLQEQLTKRGSLSPRQEEILQQVEGRWSDEALKSRESWGQDWDKDKEAKFMIALRYYHKTGYYGNIVYKYLTTAGDRCAGAPSEKEYNKLVLNKYAAGVIRNLQAEPKFPVGGTAVFRTGARTNRGKPCVILKHGNTEHVTSHAKGAKPVQVLPIGSAEPYWTEERWLKKAKKRK
Ga0209349_10190223	F012401	AGGAG	MIDGILSLEKAALEKLTEDRIASGSLGEEVEEVLSAAGIYWDTLNEEYFSIEMFQRETFERLAKEYASQDYA
Ga0209349_10190226	F012463	GGTGG	MKIGDLVKLIAEPQVDWMFNYLEETFQVLDFPTETGVELKMIGTVPDWIWIIGKDNLELADEEG
Ga0209349_10190227	F027156	GGAGG	MMPKVGQLLRWYDNPVLNPDGQYNDVGIVKEVQFEGINFFDNDEYEYVVIIDWCKGPHHSEHDQCDYEESIQTNEIVVVG