Scaffold Ga0209349_1017400

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1017400
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2602
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051266	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_10174001	F051266	GGAG	MKSIYETPIIHDRHLVKQWIETILQRDDYKNAFKMPKNLTIITCRNEGPMTERLIDSLIGWVEISVLEKSLEYLGIEGLVVLKDDRLPWRNTFKFEMLHNYLNSGKCNTEYFMCCDAIDVIFKKDPQEVIDIFESFNCEALFMSTPGLDGYSCMPEVKRFVDKINGNSGRY