Scaffold Ga0209349_1015833

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1015833
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2768
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014898	Metagenome	259	Y
F022668	Metagenome	213	Y
F095745	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_10158333	F014898	N/A	MFNDRWFIVLLFFVLLGIGLAGCNTNVCPDKTTVEVGVTETDSKNDKLQEKKSITQTWKWGKSKCQER
Ga0209349_10158335	F022668	AGGA	MEEPVHYLVLLLLQFDGTLVKEVLEFTRPMTLMECLDFAGDHREVISHYVFEEDDKIINAWFLNDGTGTWQGSICVQDPDKL
Ga0209349_10158336	F095745	N/A	MESLFHIKCHKILDHQQVEVHAVHADSILIETHFVDSIVLEQLKILMFVISGEKGISKDNAIL