Scaffold Ga0209349_1014976

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1014976
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2872
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014127	Metagenome	265	Y
F029745	Metagenome	187	Y
F058991	Metagenome	134	Y
F093714	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_101497611	F014127	GGA	MIAGDETSWDYGFMESIRDQVQNGRTLSPNQERHLQQIEGRWSDEALASRADFAKGWDDDKEQKFAIALQYYRKTGYYSNIVYKYLTPEGARQVGTPSEKEYNKLVLNKYATGVIRNIQGESKFPVGGTAVFRAGARTNKGKPCVILKHGNTEHVTSHAKGAKPIQVLPIGSAEPYWTEERWLKKAKKRK
Ga0209349_10149763	F029745	AGGA	MPSKAPRVGDVVKSRVTTESPAGFIVGTEGIHVWVRFFDTAAQGESWDVYSRRDTLEVISRANSR
Ga0209349_10149764	F058991	GGAGG	VQTHADFRIGMLVRWHGDNYADDDPNDLGIVVKMPGQNFHGYYHIAWSVTDTVSHHSPDMIEESLYQGRLEVVR
Ga0209349_10149767	F093714	GGAGG	VKIGDLVMKQRNSSSREDAGLGLVIGIVKDDGLFAPRGYKVRWSNDYGTFWASEEKLERVNANR