Scaffold Ga0209349_1013971

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1013971
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2996
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011305	Metagenome	292	Y
F025764	Metagenome	200	Y
F038273	Metagenome / Metatranscriptome	166	Y
F061352	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_101397111	F061352	GGAG	MVKKTMTFKDFLARTSVREDKHGRKVLFVEEIQLRKEKND
Ga0209349_10139712	F011305	GAG	MKPHKTSVTYGKSYTDKSDEDKTDAVKDTFTVKQDFIWE
Ga0209349_10139715	F025764	AGG	MIEKITSVKDLIRIDKYEDSSRSSASVCYGGLAGMLVATVKWVGISIQRDQTAYALEILERAIAERRKVDDVVERYNRRFNAEFKEI
Ga0209349_10139717	F038273	GGA	MSLYDNLLKLKDELKGKPEKKPKLKRVMSILIRRYDYGVDDMEEYRWGDFRDEIASIKRF