Scaffold Ga0209349_1013269

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1013269
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3100
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010920	Metagenome / Metatranscriptome	297	Y
F016410	Metagenome / Metatranscriptome	247	Y
F067830	Metagenome / Metatranscriptome	125	Y
F095326	Metagenome	105	N
F103070	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_10132691	F095326	N/A	MKSIPFNINRSLNKKDKSRISSRKHRKLHGICKDGSSKSREMAQATRLNMYRRIREEKENPYTKH
Ga0209349_101326911	F016410	N/A	MRRFSSRKEQLEWADKLLRKLSDKNTGGVTPIIKQMITEKYIGRLKK
Ga0209349_10132692	F103070	N/A	MIDKKWSFKTTKELVGFVKEFKEQQSKILDVDYLKLIAVLRNRRENRTVDQESDKYIDKELGTIDSITDMKKAENIQYPSETKWMIHKARTMIKK
Ga0209349_10132698	F067830	GGAGG	MSDKKSKLVIVDEIGNDKALAYRNKPSVEIYPTTKEVGFSEFSYSWEEIIAVGKKLEELHRKNLADVL
Ga0209349_10132699	F010920	GGAG	MSEIKMYDVLISYPIKVGAENEEHVREIIMANELLRNAADLTLKITEAKDE