NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209349_1011483

Scaffold Ga0209349_1011483


Overview

Basic Information
Taxon OID3300025112 Open in IMG/M
Scaffold IDGa0209349_1011483 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3402
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (94.12%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005524Metagenome398Y
F024648Metagenome205Y
F062171Metagenome131Y
F084099Metagenome112Y
F093714Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209349_101148310F062171GGAGMHPGDLILYGTKPHWELPGVLGILLRKLQYDTDDDEAQNWDGKPAWWIQFINDEGPMWTYETDLFLVSRGN
Ga0209349_101148311F024648GAGGMCEYHLYPGDMFRTKAGLGLIVEKSGGYFHYSNVGDDQRKGYPKIETKRFYGYCDDMSHGQILEVILLPNRKYRRKRK
Ga0209349_101148312F005524GAGMDIGDKVQHFGTGSIGTVIDSSYEVETPFQQLCVVWEDDLAPHKDSWERREALSIIPHAPYDFTITD
Ga0209349_10114835F093714GAGGVKIGDLVMKVLGSRARDEAGLGLVIDVTYKSGAWRTSLPQTMEHSRGYKVQWSNDYGTFWASEDKLERVSENR
Ga0209349_10114838F084099GGAGMKIGDVVRMNTPLTPERYGLGLIQKIVRARQKSYRLVYHILWPDSTISCQYDNEIVLVGRVE

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