NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209349_1011292

Scaffold Ga0209349_1011292


Overview

Basic Information
Taxon OID3300025112 Open in IMG/M
Scaffold IDGa0209349_1011292 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3438
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001922Metagenome617Y
F003616Metagenome477Y
F003617Metagenome / Metatranscriptome477Y
F014859Metagenome259N

Sequences

Protein IDFamilyRBSSequence
Ga0209349_10112922F003616GAGGLIWSEKLGKEIGTYNSLGGLRINPKPFIHSTQNTVVTCRICKGVGCNAITHESGLVTLNPCVLCKGKKRRSNRIG
Ga0209349_10112925F001922AGGMVLQKLLVEEGIKRGLKESQKYSVSVLGYDFIGLVSRLAVFFVMAFLINSYFIATIQGGIWLNSLGGFFNMKFPSTLPEWLTQLFTTGYKGFTFWNLVTTISVLIVVIEAMQYDRMLKEKGQKPNITTLAVFGVIALGLSLITFPTILQKLKERRILNA
Ga0209349_10112926F014859AGGTGGMANELIPPEIIPIIWFAGISVTVYFFFRKFSDVIKEKIKHTTRKSKTVNTEEVGDQFDNLVNNAPRILDEVNKEIAAQREQGVTDSQMKGLLQKKQLLELGTSIPPEVYNLVGKPAIKKLIGFIGKI
Ga0209349_10112927F003617N/AFPVVFSDTDSGILLNEGNDTAFSQTYTFNPDMTAVIYALHLNIPAVITCSAFTSGTLNVGALHIKITERSTDDRLLYENTFQSGAANLTGTGTSMHWFTQDIVETIQVRKGNPIDILIELITVVTGTNTRQEGYAPVAPYLKTAVMKRFTPAGIAMHMHADLSHADGVFKYSKRRVSMLGQGG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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