Scaffold Ga0209349_1010686

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1010686
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3567
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008105	Metagenome / Metatranscriptome	339	Y
F014794	Metagenome / Metatranscriptome	260	Y
F018622	Metagenome	234	Y
F018815	Metagenome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_10106861	F018815	N/A	MNVNLEKVTNLLKPFLLRDIIVKTDKKILKRGKLKIFQIKQYHINLTLEYNDAVKSYEIPYPFRVDRHDHGAILNYQLSSFIPKKQICKIKFLDSSSKSKLYDNLVYMLTSADF
Ga0209349_10106862	F018622	N/A	LEFAREEMIVQRATLDSLLLNNVCDIRFARRIVKPGQAPTRRMLCTKSLSLLNSINGRISLNYFTPKGPQHSYLGPDNLAVAWDILMQDYRNINMNQCDLISEIPANEEFWMYFNESIYPMSANQKLNFMNS
Ga0209349_10106863	F014794	N/A	MAVASIDNLAPTKSLIDLTQKDKGDFGLEDYDLNFIFDDILLVEYVDETDQGDEVIRNGIIVPTNALTKAWRKGKIILAGPETKYAKEGDIVIFPNNMGVSISNINVTGKGKVEKGIFLNEERMFGICKRRNDSTTSNT
Ga0209349_10106864	F008105	N/A	MNFFQLQNKLFYSKKDKAGDLDTEGEQAFIPFLFNRWLSFYNNDMSVFTNETFNKFSTIFDDKQQAYRLYYYLIPRLKWKKIRYIKKTKKDVAEEEHLELIAKNKNISKRELLQYVELAKTFAK