NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209349_1010129

Scaffold Ga0209349_1010129


Overview

Basic Information
Taxon OID3300025112 Open in IMG/M
Scaffold IDGa0209349_1010129 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3696
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022530Metagenome214Y
F041443Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0209349_10101292F022530GGGGGMFNKLKKAGAAYVAFGVGTIFGSIIASIMGTLIYQVVTGNKDAERILQITECLEERAEK
Ga0209349_10101296F041443N/AMKKAKKLRRGMRVKLKTGKKVIIWADPPATIGKKNTTMPHGPIVLEGYVFVYTPNNPNKILMEKIDDIDY

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