NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209349_1009917

Scaffold Ga0209349_1009917


Overview

Basic Information
Taxon OID3300025112 Open in IMG/M
Scaffold IDGa0209349_1009917 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3750
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012033Metagenome284Y
F014627Metagenome261Y
F015480Metagenome254Y
F071130Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0209349_10099172F071130AGGAGMSIGIKHTKTEQRKIVNRTFGLVRNGHSITSARKTVAKEIGVSPNTLWVWQDKFGMATPKVVKTADLVRNNGTTNLTTKTSTTAIKGLEVMKGQLGVVFTSLVNQDGRFSNSDATAISGVANVILGSCKQVLLERKAINTVAKTEHLS
Ga0209349_10099174F015480AGGAGVNLPTLENMHVSERVESMYAQIIAEEDIGEDYGKKAIISERIHKSGQYQL
Ga0209349_10099175F012033AGGAGMERRLSYQKEYTSPGNINFEYVGDITEDDAMMLQQKAGYHPAGYGFYGFACINGIARWNCDNNCD
Ga0209349_10099179F014627AGGAGMSKIKAKLEESMMLHPEFYNGHVNEEFWMKCREEEILERENKPPIKIIRKSKSCQTKKKRNQ

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