Scaffold Ga0209349_1009917

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1009917
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3750
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012033	Metagenome	284	Y
F014627	Metagenome	261	Y
F015480	Metagenome	254	Y
F071130	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_10099172	F071130	AGGAG	MSIGIKHTKTEQRKIVNRTFGLVRNGHSITSARKTVAKEIGVSPNTLWVWQDKFGMATPKVVKTADLVRNNGTTNLTTKTSTTAIKGLEVMKGQLGVVFTSLVNQDGRFSNSDATAISGVANVILGSCKQVLLERKAINTVAKTEHLS
Ga0209349_10099174	F015480	AGGAG	VNLPTLENMHVSERVESMYAQIIAEEDIGEDYGKKAIISERIHKSGQYQL
Ga0209349_10099175	F012033	AGGAG	MERRLSYQKEYTSPGNINFEYVGDITEDDAMMLQQKAGYHPAGYGFYGFACINGIARWNCDNNCD
Ga0209349_10099179	F014627	AGGAG	MSKIKAKLEESMMLHPEFYNGHVNEEFWMKCREEEILERENKPPIKIIRKSKSCQTKKKRNQ