Scaffold Ga0209349

Basic Information
Taxon OID	3300025112 Open in IMG/M
Scaffold ID	Ga0209349_1009789 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025112 Open in IMG/M

Scaffold ID

Ga0209349_1009789 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3787
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (86.67%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

3787

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (86.67%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-108.7999

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012401	Metagenome / Metatranscriptome	281	Y
F012463	Metagenome	280	Y
F014127	Metagenome	265	Y
F027156	Metagenome	195	Y
F029745	Metagenome	187	Y
F040056	Metagenome / Metatranscriptome	162	Y
F073529	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_100978911	F012463	GAGG	VKIGDMVKLVAKPEMDWMEGYRDKTFQVLDFPTDTGVELMMVDSRPEWVWIISRKNLYIVEKPLTSDPFSAIV
Ga0209349_100978912	F012401	AGGAGG	MIDGILSLEKAALQRLTEDRIASGSLGEELEKVLSEAGIYWDTLNEEYFSIDAFQRETFERLAAEYASQDHS
Ga0209349_100978914	F014127	GGAGG	MLERINNVKGRILIAGDESSWDFGFMQSLEEQLNKRGSLSPRQEEVLQQVEGRWSDEALSSRANWEQDWNRDLEAKFWIALQYYRRTGYYGNIVYKYLTTEGVRCGGVPSEKEYNKLVLNKYAAGVIRNIQSESKFPVGGAALFRTGARRGFAGKPCVILKHGDVTTVNSHAKGAKPIQVLPIGSAAPVWTEERWLKKAKKKK
Ga0209349_10097892	F073529	AGGTGG	MKIGDVVMLRKGRYNFSATEKAKWTWTEVLGVITDDRGFVDGTAEYKVYTVDNKHTWQHIDDLRIPE
Ga0209349_10097894	F029745	AGGA	MASKAPRVGDVVKSRVTTESLAGYIVAKEGIHVWVRFFDTEFEAGDSWDVYTRRDTLEVLSRANPT
Ga0209349_10097895	F040056	GGAGG	VQTQLDFRLGTLVRWNAGNTGEPEDIDELGVVIQMPGANWSGNYHISWCSSNTVSHHSPDMIEESLYQRQMEIVG
Ga0209349_10097897	F027156	GGAG	MIPKVGQLLQWYDNTERVYSTSPHNDIGIVKEVQSAGENFFGNDEPQYVVIIDWCKGPHHSFHDQEEYEESIRQNEIVVVE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209349_1009789

Overview

Ecosystem & Geography

Associated Families

Sequences