Scaffold Ga0209349_1007169

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1007169
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4610
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029601	Metagenome	188	Y
F039585	Metagenome	163	Y
F105509	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_10071692	F105509	GGAG	MTVGDLVLNPCGETAILLTEPRLEDDPDFGDPYYVADVLLTEFGEKDVWITEDLEIINEN
Ga0209349_10071694	F029601	N/A	MMKVGDLVRFDAPDDKFHGSKGIIVRCVEGNTYTQGFHYELQTLDGHVIIALDFELERLENDVE
Ga0209349_10071698	F039585	GAG	MQICRLKKWCLLLLCLASVLCARISLLQAEEDLLHARADKCLGYFTEIIEIQKFREMLIFGANVLIERYERGELQKKELDATLAVWYITESELRQKVTKIYDTAYAEKCFDTTTRKEEK