Scaffold Ga0209349_1004442

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1004442
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6204
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012463	Metagenome	280	Y
F027156	Metagenome	195	Y
F029745	Metagenome	187	Y
F058991	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_100444213	F012463	GGAGG	VKIGDIVKLIAEPQVDWMFNYLEETFQVLDFPTENGVELKMIGTVPDWIWIIGKDNLEVTEEEK
Ga0209349_10044427	F029745	GAG	MASKAPRVGDVVKSRVTTESVAGFIVSAEGIHVWVRFFDTALEGESWDVYTRRDTLEVISRANSR
Ga0209349_10044428	F058991	GGAGG	VQTHADFRIGTLVRWHGDDDDGADVDDLGIVVKMPGADWHGNYHIAWSITDTVSHHSPDMIEESLYQGHLEIVW
Ga0209349_10044429	F027156	GGAG	MVIPKVGQLLRWYEIEVRDLVGRENDDIGIVKAVQFEGVNFFGNDEYQYVVLIDWCKGPHNSYHDEHEYEESIDSGEIVVVR