Scaffold Ga0209349_1004175

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1004175
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6446
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (41.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053550	Metagenome / Metatranscriptome	141	Y
F070556	Metagenome / Metatranscriptome	123	Y
F074050	Metagenome / Metatranscriptome	120	Y
F077815	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_100417513	F074050	AGG	MKRSYIKQLVKEEIKNIKAEATTRVVKKGTVTDNARLAMLLSSLGKRAKGSFQKRKVVSQVIMALASSLEITPNEVLRAYLDYKRDAKGDASTKVKKDD
Ga0209349_100417514	F077815	GGA	MQGKDLKNRLKQIIREEVNSALNEESYKFGTLADPKDMDPNDPMVKVTGFASLNRSSIRNQIVDRLSGALATAKDAAKGGPTSYEAYKQLQDLISDAGILYKLIGAELDTANQLEGKRLKGGRRSIPIPKQ
Ga0209349_10041753	F070556	N/A	MGFHKRYINDEQVIELYRTQGNQSIIDLYTKGVDVVITSGDLSEHILDILNIGLLPETNKWNLISELVSKASIKKGHK
Ga0209349_10041756	F053550	AGTAGG	MKSIMTLNFHVKDLDHFNMREEIKKARLKKKVMDNYPNAKVEYTNTGVQIMSGDIYIAEEFYLPTTTDVEKAWEYAALACKTRQQFNRTHPMRMDLSDIESKINRINKRRGPRNKRK