Scaffold Ga0209349_1003700

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1003700
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6916
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026408	Metagenome / Metatranscriptome	198	Y
F063091	Metagenome	130	Y
F101067	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_10037004	F026408	AGG	MALLLVLVMCALIGISAMSLYSTVNTEVMIAGNNHRISQAKISAASGLAHFTALGLAYDTLREQAGGLQTLQILPETQLGAKTSYEVKVHFYPRLSERQYVVESIGYYKKADRIISAHPLKALFDGRQ
Ga0209349_10037005	F063091	GAGG	MIYKSLILLVFANLFNQAYNLEQIQCPKWVPGTNQVLPQGVSLSPELELENRVRCYCEVVKAKEAQCLARHVPATICKARTRIWVENNLTLKQGFRLVNGVPPAPRRDRMMSVQP
Ga0209349_10037007	F101067	GGA	MDTPTLDLHGLKHHEVQNVVTRFLERWLDKGLFVDVITGNSEQMLFETVKVIKQYGLEFHTGLPYHQGKVRVVMYDEYH