NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209349_1003515

Scaffold Ga0209349_1003515


Overview

Basic Information
Taxon OID3300025112 Open in IMG/M
Scaffold IDGa0209349_1003515 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7117
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017121Metagenome242Y
F019113Metagenome231Y
F021532Metagenome218Y
F034892Metagenome173Y
F100958Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209349_100351510F034892GGAMEIKVGDLVRIRGNDWLGKPLGIVTEIKHLTHDQSGTEYTAVSAVVGGKEFTFPDDAFELVNSVESEKN
Ga0209349_100351513F019113N/AMDPFEVGDLVRDKLNADEGAYGLGVVVSTESTGLIGEIARAPAYRDVYSPAAADIPGKRYDVYFTKFERTITFHGDYLEKV
Ga0209349_10035152F021532GGAGMSKEVIILKEKWNPAAHEAPTARALEMVEVKDAEFEETPFPLSLDAQKRLLELIYNRKSGIITRQELIDVLFNPQAARTGTIIRCRL
Ga0209349_10035153F017121AGGAGMFSLIHKLLARARSLDAVYDRIEKIESKLERFEKLADENESLWQFLDEQKEMEGVFAGNAEEFQEEFTDIMVRNMKPHGDA
Ga0209349_10035159F100958AGGAMVFHGDYEVEFEIYEKAEGDWRSKLLGHMAAINPEDAKARWIRAHEMSEERNARIHAVPALEEWK

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