Scaffold Ga0209349_1003402

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1003402
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7243
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016619	Metagenome / Metatranscriptome	246	Y
F034394	Metagenome	175	Y
F042629	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_10034024	F042629	GGAG	MTITTYDAVDDIISLIKTKWSNLRPPHITKVWEKRTVGFIDDRSDEIMVAPKGENIVYFGLGGSSFWHEQILELDIRTYQDLKRHNKVVKEIVKIIKDNVVGTTYTDLRIIGSFSRNFQFRNMYSYILNISYRKADPS
Ga0209349_10034026	F034394	N/A	MVTTTTYCSVNDIIDFLRVPITSTTTPNKEMVRKIIVRKEEELDRRIGHTWKTKKVTREIHDLPLLYTFGWGTPLFLQHRNILELDVDEGDKIEIWKGESNEWENIIDSPQWYHAEYEYGRIYIRGFLFTILRKNRVRVTYRYGGENYAGDTDIPPDITDAVIKMTAIDIMNTSFRMDEIPSGGSVSPTESKRFWQEDIELCISNRREVFVIP
Ga0209349_10034028	F016619	N/A	MAITIAQNSDHKSLTGKTLSVQSQLTSKLKECIVDVTYGGSDNYATNGNTVDLSLGGRISTVIGAEILHSSAGLLLQYAPAASGAAATGKIKAYGHTPTSSTATVVALEELDNADTAVNSLTIRIRVIGF