Scaffold Ga0209349

Basic Information
Taxon OID	3300025112 Open in IMG/M
Scaffold ID	Ga0209349_1003248 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025112 Open in IMG/M

Scaffold ID

Ga0209349_1003248 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7461
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (83.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

7461

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (83.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-108.7999

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013357	Metagenome	272	Y
F017121	Metagenome	242	Y
F019113	Metagenome	231	Y
F021532	Metagenome	218	Y
F062279	Metagenome	131	Y
F064629	Metagenome	128	Y
F100958	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_100324812	F019113	N/A	MDTLEVGDLVRDKLNSGEGTYGLGVVVATDSTGLLEEEVQVLGNEQPYADQDIPGKRYDVYFNKFERTITFHGDYLEKV
Ga0209349_100324813	F013357	GGAG	MARRKYITGALVEARNSKYGKGFGIIVSGPNMDTKAASMYTDLVNPQEWFKVHWFEKPGNVDSYYLRRGNGQVDMTKNQIKIVRKR
Ga0209349_100324814	F064629	GAG	MTKLYEDSIDDNPYPDRKALRNFTWTTEALGEWEDIWHELWHLGYKWEWQNSDRYARRFGERFNLYSCHNDAVRLDMATPLPGLVVIYEIRESLLDDPGDDQRLDHVVGAIDAWLKKHYTPA
Ga0209349_100324815	F062279	AGGA	MYERMRGFLHHCINVVITIILAVALGVYLIINSVIMTRVINDLQLDTYVSVDTGFGVVMLILLLGWGPVWLTRSLERRR
Ga0209349_10032482	F021532	GGAG	MSKEVIILKEKWNPGAHEVPTARALEMVQVSQDEYREAPFPLSLDAQKRLLELIYNRKSGIITRQELINVLFNQEAIEPGTIIRRRL
Ga0209349_10032483	F017121	AGGAG	MFSLIKKLLSRARSFDAVYDRLSAIETKLERYEKLADENESLWQYLDEQKEMDAVFVGNAEEFEEEFSDIMIRNMKPHGEA
Ga0209349_10032489	F100958	AGGAG	MVFHGDYEVEFEIYEKRESDWGPKLLGHMVGINSEDAKARWMEAHQISHERLSALEAVPAIEECR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209349_1003248

Overview

Ecosystem & Geography

Associated Families

Sequences