Scaffold Ga0209349_1002411

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1002411
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8903
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F002150	Metagenome	589	Y
F003270	Metagenome	496	Y
F008596	Metagenome	331	N
F018017	Metagenome / Metatranscriptome	237	Y
F021554	Metagenome / Metatranscriptome	218	N
F026289	Metagenome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_100241112	F002150	AGG	MVAIQSVGLARGIGKRGTKASGEFLEKKLGYNFVDLVTKLTLFYVIAFLIAKYMEAIIYFQGGLSTVAGFFGIKMAQADQLPKQWVELFVDTNQQTYTSTPTAPGQFNPPGWDRPYDYGTPEHQEAEPYLFPEKEVKFKFWDLVNAIVIFYIGWEAYKYYRNGGRDFLTMAIFSLMGLMIGVLSFSKFLGKFSLNRFQEENK
Ga0209349_100241113	F021554	AGG	MIIEEIPFFTEFVILGLVLGFGYGFTKLFLNHAKDKNKIIRKEKKVENDNKLENELDKYLDNAPAIIHHLESEIANLKEKGSTPEQTQRLESELNQARTLQKYEPIIRIAGKPLLKKAMSLLDNFKV
Ga0209349_100241114	F002100	GAGG	MSSFKPALIKPVYDVANFGHDNSLPLNCLSGSTATLTPSTATFVQVLEDGRVPIDEVDLFIMDSDKMAMVHQGNDTDFDVSWEWSPDMSAQAYQISFNFGVAMKCSAYTSGNFKISNVQVICKQVGGGEGDFTYINKIIDPGMTNMAGVAEQVAIINFSTTVSAKVFDKPLTFQIKVNTDSGTGTYQTGIIPLFCYISPAVPKTWTTSSVLMHIHADLAHAFPIFRDEDNMNMVDTGIGL
Ga0209349_100241115	F008596	GGAG	MSGSWDIATATSIGTGTAKTQINGGNNLTKPTQAVNLVEVVPYISSSGAMTAGESLAVTLEIDSFSVDLLPKRIIVPPIQSGLGTTITQVNPLLEAYECNTGLQEGATSQFILSGTNQIAPTVATNLACALHYSTLPPNRPEHFYHKPDNETNFTTATTTSGNNFTINDGMWLEDMYVSVFTAVYTVSQSLTGYGEFSSNDFGNSLPLKVPMQPGCASLGATGTQGILALASYHNTHMPMKTSCKINTSFTNDITQTGTTSFIMGVGYTKQ
Ga0209349_100241116	F003270	N/A	MARKRRRRKNKTSKNKSIKSLARTWANRLASPVAFWSQLSEKDYQVLNASSSYAGADYLTKLKVASNILTGSLTGRVLFSDQYNPSPNGQPRINPAGVINKWTGIGIAGKIYSIVGKQMGLPESATIGRIGTKIIYGGAVGGFFDPPTPSGRVTTYAVTPNVMVQNRATTQRRHSQFQSNLNYVPPDSFDQSTGSAFR
Ga0209349_100241118	F026289	AGTAG	MNLMEEKKPKAKNQDEAFIDTLVEMLAEPHHDLAWNEKFKAVVRKHFDI
Ga0209349_10024118	F018017	GAG	MKNDSLNADNTTTKIDSLWANQQKIIPIPPLSALKLHGDNCGGFRACHTCRGTRFVYIRSKWDNRITYKKCMACSGSGSIDTRTLN