Scaffold Ga0209349_1002172

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1002172
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9439
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008649	Metagenome / Metatranscriptome	330	Y
F016323	Metagenome	248	Y
F081755	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_100217213	F008649	N/A	MDFNKGRNKMTELETLMLDVTNTLNHNGFDEVKAVPNNTQFSIRVNYWDRIPVSLIETMEQYHSIRITETDWEDEDCGTLYRYLVEVVDEDCGYTIDELNELDSNYTEEAMYLESVGIDDDVEWGVA
Ga0209349_100217218	F081755	AGG	MKENLNIKGENMNNNDCTINGMYSPNMDNLNGTPSCDIFGYLMASVGVTNNTSEEDVVEMLYKLKNRSSNFDLYISTILKNIIGYGDIDDYMEHLTDTPNEFITAQGEVVSVSDLSEII
Ga0209349_10021727	F016323	N/A	MPGSKKLIDIIDEMNLKEDTTNKMVVDKLSRLAKLILDVDKINMTNSDLTFVNNMMEDLIESPHHRITRLEIEKCNRLFKQYKEMVS