Scaffold Ga0209349_1001438

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1001438
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11798
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023716	Metagenome	209	Y
F033950	Metagenome	176	N
F043085	Metagenome	157	N
F065119	Metagenome	128	Y
F105880	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_100143815	F033950	GAG	MMTQEDYIRLDYRAGALVKPSVGARVEGDPASLGVGLITGPPEHDGHGGYRVPVKWMGTKRQMVWKMYIEDLTIISPAGCEE
Ga0209349_100143819	F023716	GGGGG	MKRREGWDTLVPQLSRVPIEAAKNGKIEGVSTRGEPIVKVGDLVKYIVPDDWEYHSIEVPIFADEPALGVVRGINWMLISTNKGDYYIPEAEVLWSLTGKTTKHSHDSLEVVNAVQSG
Ga0209349_100143821	F105880	GAGG	MRFRRRIVRTAIAFLAMFLSPEEAEELMEELRELAKEHKENT
Ga0209349_10014383	F065119	GGAGG	MRQIYFLIFMLIGCRGYLSPDPPTAKLVTDYFVDYWWELDIEAFDYNSCFILQEEDDTGFIKHPIFLKESANDEPELFGTWNFYPPNTFYIYEDGEEPPYELEVYEMSDCWSVEWGSMVEIACPCSF
Ga0209349_10014385	F043085	GGAG	MKYMSRTKIELIEIIEGQLDDIKELEAENDELWKLLDDIKESESITFAVLDKAKPMTLEDIALKIMKPIDE