 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025112 Open in IMG/M |
| Scaffold ID | Ga0209349_1001344 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12206 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (87.50%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 18.92 | Long. (o) | -108.7999 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003330 | Metagenome / Metatranscriptome | 493 | Y |
| F012463 | Metagenome | 280 | Y |
| F027156 | Metagenome | 195 | Y |
| F029400 | Metagenome | 188 | Y |
| F030754 | Metagenome | 184 | Y |
| F093714 | Metagenome | 106 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209349_100134420 | F012463 | GGTGG | MKIGDIVKLIAEPQVDWMFNYLEETFQVLDFPTENGVELKMIGTVPDWIWIIGKDNLEVTEEEK |
| Ga0209349_100134424 | F029400 | GGAG | VKIGDLVTFCPEAWGTPLEDRPLGVVMNVEDYRDGIEPATFLMVTAIFPGDDIPYSSNIKDFEIINEDW |
| Ga0209349_100134427 | F093714 | GGAG | VKIGDLVMKQRNSSSREDAGLGLVIGVVKDDGLFAPRGYKVRWSNDYGTFWASEEKLERVNENR |
| Ga0209349_100134430 | F027156 | GGAG | MIPKVGQLLRWYDNPVLNLDGQYNDVGIVTEVRTDEIEWDHQQYDVIINWCKGPHHSLHDQEEWEESIRTNEIVVV |
| Ga0209349_10013444 | F003330 | GAG | MRKLDAWGKPILKVGDVVTSIPLKDDPGTVMKILRVNANGAHHVAVKWFSWNNGSTTEEHVRELELVSKAKR |
| Ga0209349_10013447 | F030754 | GAGG | MSRRHNGNNAFALANGSRLAADSTHGVTCTFTGGCRVFDVNISKKHEMHWRCEHHGGVNNHERANAKDEDCRDGIPGEARRERIARFRNKGKEATTTFHIPTFLDEPEKPKAVKKMTAQKAKIAGKSAKQLRREAAMAELGLTEADIIKFQGE |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |