Scaffold Ga0209349_1000885

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1000885
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15043
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (97.37%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038405	Metagenome / Metatranscriptome	166	Y
F039339	Metagenome	164	Y
F079215	Metagenome	116	Y
F105337	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_100088510	F039339	GGA	MLTIDSVAQVASDNNLVLNRHEQTIDGVTYRYTLYDNNDFVEDFFETLAQAWSYIYYYDEEREYANLR
Ga0209349_100088511	F038405	GAGG	MRISGDALNKLRPVLTKALDDGAEVSFVYHGKRRNGPLKDFGWGPQGPFITIEDTRIRTVLGVATDGWTTEIKSFSLAKMTELRIEQFVVAGE
Ga0209349_10008853	F079215	AGG	MQNLHRAIVSMPSDGDARPVDNFEHLTIEYGGYAWAVKVPKGEFAQAHQMMSRVADTDGVENVA
Ga0209349_10008856	F105337	AGAAGG	MARRRIIKRKGADKFTGRTKAKKGVIAVGFEIVHKITEKRWLTVSNVRPQNMFDLISQYNRGRYGWAQVRVKIKAYKEGCKVKRSKRGEKHGIVG