NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209349_1000867

Scaffold Ga0209349_1000867


Overview

Basic Information
Taxon OID3300025112 Open in IMG/M
Scaffold IDGa0209349_1000867 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15227
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (53.85%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000497Metagenome1075Y
F002594Metagenome / Metatranscriptome545Y
F011527Metagenome290Y
F013138Metagenome / Metatranscriptome274N
F059351Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0209349_100086714F013138GGAGGMSNPFTRRGTEPNYTTENFSVKDVKKANARFYEKNPGCIDDAAMIKKAMQDPGDEVVQQQTRREEEEKNFMKKLNITGGIY
Ga0209349_100086720F000497GAGMSNTKTKIVENKIALSFREFKDKKILFRLFNNKRDKTKSFIIYDKARFSTTIEKAFNNDYRKIDIEYDTTKNNRFKKVNLLVDINSYLDKNKKDLYLDLINSNLEYIKTNKVSNDIIENIKYFENKVKSL
Ga0209349_100086730F002594N/AMAKVPISRLNSAPEKYVQNDFNQLIEDLQDMVKILNSTYPKDQTDEQDRKEFFLSG
Ga0209349_100086732F011527N/AMLVYFQFRRCGYYAKGLIEADNLDVAEKALWSEHVGTFRWEPQLNYIPDDANSLTVEEYKYEPSSDGKTEPEKKLGSQMG
Ga0209349_100086735F059351AGGAGMTQKIKVTAEMEIEDDVALDGLSMDTSLGLLGTIKSYDIDYEKKKELGPKLTYDEVKERYFHKDLRKDVIRTQIISAFMTQESDKFHDFAVDAIDEAVLKQEFVEIPEQDQELVTEILNDEFYHEVLAKKELKDKHGIE
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