NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209349_1000740

Scaffold Ga0209349_1000740


Overview

Basic Information
Taxon OID3300025112 Open in IMG/M
Scaffold IDGa0209349_1000740 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16346
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (23.81%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016734Metagenome / Metatranscriptome245Y
F036473Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0209349_10007407F036473AGGAMITSLASLKAILLDKVCEVKFVRRNPKPGRPATRRMLCTNNVQLLNSVEGRTILNYDPPREAPNYNPNQENLIVVWDILMQGYRTINCDTVDLISTLEADETFWVYLNEKIAPMSAGEKMGFMNT
Ga0209349_10007408F016734N/AMSDKTIKKHYNQALDKLDLSDSERDAFDHDVKRSLINLDTYQDTDTFSLQGYKLSKVMDDIVLAQYVDLSNDGRSVIRNGIHIPLSQVKRTWRLAKVILVGPRCSYTSPGDVVCFPDDKGIKVDNLRVVGYDHSLRDCLFLNEQRFFGICQDLDDDDNQPSKS

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