Scaffold Ga0209349_1000603

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1000603
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18020
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (92.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010027	Metagenome	309	Y
F012400	Metagenome	281	Y
F041753	Metagenome / Metatranscriptome	159	Y
F080510	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_100060310	F080510	N/A	MSWIHEDGLHRSKHGIILRREQHQAPELNVGDRFFDVGNGRWATLLRIRPEPEALGAPFEALYDGCDTYSPFIGCAMHCDIGEILCESR
Ga0209349_100060326	F041753	AGGA	MIKYQVHFEKPTCKGIKRGIRTIKARNEAEAIIKCKSVVANSFGHWVNRLANEVAV
Ga0209349_100060328	F012400	AGGAG	MKYTIKKFNGDDQYSWAVFRKADVKGMRSPIFYGQATPIINGLDQYEARYHRDRLEKIA
Ga0209349_100060339	F010027	AGGAG	MATANAKYEFDITDSEVLAPHPKSGLATLVVQGVCTNADGVSFDFIAVNNLDQRYPERFKVNWNGSKARMPEVVGHGLADDVRAGRSVSADLYFTRGARIAIAKKCITLFPLWKQQAGAIGEEAAEETDAS