Scaffold Ga0209349_1000378

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1000378
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24030
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (82.76%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F005547	Metagenome	397	Y
F010950	Metagenome	297	Y
F018267	Metagenome	236	Y
F018286	Metagenome	236	Y
F019158	Metagenome	231	Y
F030886	Metagenome	184	Y
F053548	Metagenome	141	Y
F067640	Metagenome	125	Y
F086310	Metagenome	111	Y
F087780	Metagenome	110	Y
F101902	Metagenome	102	Y
F106169	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_10003781	F086310	GGAG	MQVGDIVKHFLTEQIGIVVDISCNRDSRNIAPVQVMWTTQGESLFGPGHQEWCGEKSLD
Ga0209349_100037814	F010950	GGAG	MKIWVVRNTCLYSNETYLSTHITEKGALITAIKVVREDLTSGFDEDELEDMRPGMPHHPEEDLMQYGSDQLRRIVDDWWGYSMDINEHGQYEIHETEVVG
Ga0209349_100037815	F005547	GAGG	MKVWVMQGSYEGELFSSVHLTQKGCALACISDILEFHGIEDDETALSVMHNSYAYTDEEKKVKEATEPIEWDQERLKEMTSEQLWKIFNEWCEISWDRMADRGYNLDGNSVEIQA
Ga0209349_100037816	F067640	AGGAG	MIEVGSLLRMWGNHSTWLALDEIADTVLVVSQKTNHKMWANKASFEVIG
Ga0209349_100037818	F018267	GAGG	VKVGDLISFKPKSFGDDDWSNPGIVLDSYEHDDRQLGGWKDLIWIVWIDGYRCMVNERNDDVVYLTTL
Ga0209349_100037821	F087780	GAGG	MKLGDLVKVSFGPNEKSITGIFIEDDTYATGLDKDGWTVITRAYILWEGEVCSTPLDQLEILNECR
Ga0209349_100037823	F101902	GGAGG	MKVGNLVKRRDDSVHHGIVVEMGPQETAIDHGVLTVAKVQWNDGDLTCEFIKMLEVLSES
Ga0209349_100037827	F053548	GGAG	VKDSGAPSIGDLVVALYDEERDISCVGLVTETKGIECKIQWSSESNPIGWWPRTSLKVVSPSTQPGKV
Ga0209349_100037830	F018286	AGGA	MTILTTFILVGMIDSHDTYFATVELNTTPASNGGPATAVIPVSAFPCEIYEGKVFYVVKLADEQDAVIVCQKEPDESR
Ga0209349_100037832	F030886	GGA	MSYHDHPPSYYKTGIGVVNPLLRIELKLKKVQEVLDNISDQSILTATDLKIKLQKVMDDD
Ga0209349_10003785	F004771	GGAG	VNSVNVGDLVRMKTHDTGLVGIVLAIYTRGLSDNAQIGIKWFKTSGNTEWEPESWLEVVSASG
Ga0209349_10003787	F106169	GAGG	MKVGDLICLCPVAYPDTIGVVTQILTRDQHGPLDVEVLSGGRIESWEADEAEVINESR
Ga0209349_10003788	F019158	N/A	MTIVIDSDDREGLDAALRIARLMHDKYVSTGTSHKESFGKIEFIKMLRKFMKESVNHLNDEDSDQVKSLGDMGNLRNAKRFADRMFRGER