Scaffold Ga0209349_1000195

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1000195
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33710
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (67.21%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002282	Metagenome	575	Y
F008817	Metagenome / Metatranscriptome	327	Y
F016533	Metagenome	246	Y
F022521	Metagenome	214	Y
F069445	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_100019519	F022521	AGGA	MLIVHYQNLKHYDADKGQWLGEKGQNAIDQRKQADTLGWLMMSVGVNEITEKTIDEIIFRTKFLDFCWGKSYFVGNLSDTDLRQLFKNHIGLRIAVTNRYLKNISTRHKFMVNQLDNIEERIMKQINN
Ga0209349_100019523	F016533	N/A	MHRPKKQIKIAIIWGSQKQKKKTYKFKTKEQLKYFMMGVDEAEGWLSYEIK
Ga0209349_100019530	F069445	GAGG	MKEKGRTFDGITRPSNNTYRKNFNEIFGKKPSTDGLKGTVICKAKKCDNYLYKNESSSLRGYCWECG
Ga0209349_100019535	F002282	AGGA	MMSEEDIKEYHKLVEKLELLKKKGLETDDRGPSDLTKQIEVLKFRNEKLHQYNEKLIEEVRSLRSKLYIKEN
Ga0209349_100019537	F008817	AGGAG	MKYTVVKRIHFQYSSDSVNVIKEADTFEEATKFKVAAEMLQDKNSEHTIQILINSDDAFEFTREPLLLEAEVSKKAS