Scaffold Ga0209349_1000127

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1000127
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41625
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (73.58%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012780	Metagenome / Metatranscriptome	277	Y
F046694	Metagenome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_10001273	F046694	AGGAG	MPIESKVHRHYWDEEVWWKEEDYVDYPVLTYKVHYSRTKTVEKKIRSLLRRQKPFILNTNVLTGDDIIWVSGINGMVHAYRDASEECKEVWQAKKDEGHTLYVSNCLPFLKGSQPVWGPPPKKRKRRVSIKRGISARRN
Ga0209349_100012752	F012780	AGG	MHNVYLNGVLQSLDIQTKRMVGEVMNLIEASLPDSSATTALKKSIKQAMWRTNRNIQDDMNSMSFTDTNVNMEKIKNG