Scaffold Ga0209349

Basic Information
Taxon OID	3300025112 Open in IMG/M
Scaffold ID	Ga0209349_1000073 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025112 Open in IMG/M

Scaffold ID

Ga0209349_1000073 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	54122
Total Scaffold Genes	75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (24.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

54122

Total Scaffold Genes

75 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (24.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-108.7999

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025852	Metagenome / Metatranscriptome	200	Y
F028316	Metagenome / Metatranscriptome	192	Y
F033600	Metagenome / Metatranscriptome	177	Y
F035326	Metagenome / Metatranscriptome	172	Y
F056154	Metagenome	138	Y
F072246	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_10000731	F072246	N/A	MNNKKPTKDYSQLARWLCLFEAVNIIAEKAEKIGHTKDCLKPIPINKYINERYPSVLKDVEYEFSNNLHTHRR
Ga0209349_100007312	F028316	N/A	MKRQMPKPRNFDNLLKSSINAAESVDSMEEQDMSFINDYLAEHLKSFILLGYDLKGESVVIVSGKTPQDYDAIETLLRRVGSIDFFSDIQEQKNKDE
Ga0209349_100007313	F035326	GAG	MKNKVTTCGYFIKRLRDNGYTVNRIFSDYTSNDPRRWTIMINPEQNALYITCYVNYDWSGDFKFELNDGSHFKNYQLKTDSMEVIMTKLIEKNITPNEKTNAKT
Ga0209349_100007328	F025852	N/A	MDIITYVDSIGRTCFGEVVERADSFLRVKAPAMIMVTPNDAANMKVDVMPLFFTEFSSGEPPVFKYTTSQYTEVEVTISDKILIHYNAKINVKQEPTPEPAAEALSEEKVPEVTLFE
Ga0209349_10000733	F033600	N/A	MMKGILFEDLYKYTNKYWKDVKSRHVRPTTKTLADIAQASPATYNQISADLVPFPGDHLIEQLGSAYKNIADATGLLVQLFENPSTHLDEKVVQAATLKLQKIQDLIKSVSEDLDHDESD
Ga0209349_100007360	F056154	GGA	MTDYDKLCERYMTRQVRSFYPRKFELSTEFLDAFKLEYSRLVEGGQNKKTLLERIRKALSFHL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209349_1000073

Overview

Ecosystem & Geography

Associated Families

Sequences