Scaffold Ga0209349_1000046

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1000046
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78854
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (91.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019557	Metagenome	229	N
F022530	Metagenome	214	Y
F041443	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_100004612	F041443	N/A	MKKAKKLRRGMRVKLKTGKKVIIWADPPATIGNKNTTMPHGPIVLEGYVYVISPNHPNKVLMEKIDDLIY
Ga0209349_100004613	F019557	GGA	MKVASFSVIPLLVWVISLEVANAERDFQLQVLYQRVESLEKVNATVQEYAVRLGQVDQKLESMEDTVDEIRQDIKDLLRREE
Ga0209349_100004616	F022530	GGGGG	MFSKLKKLGASYIAFGLGTIFGSIIASVVGTMIYQVVNGNEDAAKILQITECLEERAEK