Scaffold Ga0209349_1000044

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1000044
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 80454
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 75 (78.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045149	Metagenome	153	Y
F049945	Metagenome / Metatranscriptome	146	Y
F081755	Metagenome	114	Y
F094413	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_100004459	F049945	AGGAG	MKNSMRNLIVTAAFVVGIFGITQAQVAGEFSTDVTFGETTSFASPYTGITLGSDDWELSTNLSDGDLNVEEAKYNWSVTDAITLTFGSQAEPYGLAWGLHRPSANAWVSTPRDHDISNGVGLSTAAFGVGVSAFYGDDTYWATRLSYGVSLFGINSDVGLSVNSNDAQLIDVSSNGSVLGIPVESSVEYDLANDGAYWFRSSVTPDFAKGASVLVGYNSDEEVSYGVEYKCSDSVKLSTELSGDGDTMFRVSYSF
Ga0209349_100004474	F094413	GAGG	MNREDRIYEDVHNYTKYKLVEMLIDRFQEDRIKLDNLNAIEDLADDVLKVLSVAGMKYYNELKGNFDK
Ga0209349_10000449	F045149	GGAG	MIKLKDLLNEGKITSDVERAAKKHGIKFKKKVKTVFTNDFTGPNEKGEKVKYDDWMDYNPQNYESQGRALISALDGKYIRMKPLKYTKGGGMIFRKDRKDKKTEFMITYARSFSGPYISYSGVHGE
Ga0209349_100004493	F081755	N/A	MMRENLNRNEKGVLMSTVVGNVNVDGDKIFYSPDTNNLDGTPSCDIFGYLIASSGLTIHTDPLDVVEKLFELKRMSTTYSPYISTILENILCGDIDDYTEHLTGTPLEFITSWGEVVDVKDLSWI