NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208158_1138238

Scaffold Ga0208158_1138238


Overview

Basic Information
Taxon OID3300025110 Open in IMG/M
Scaffold IDGa0208158_1138238 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)557
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-11.499Long. (o)-81.401Alt. (m)Depth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004179Metagenome449Y
F035079Metagenome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0208158_11382382F035079AGGTGGMKQCRIXKRGNMKIETLKKAEEFKQGHLNLVQYFLKRGCTFSVEDLETDKMTIKNSSNYEEIKKAINEGETHLEIYKDNKMISRVWIIPYNEGIDTIADYLVSKEIDDWSNKFEKTMEQL
Ga0208158_11382383F004179GGAMNKEIQLEMRNVFGIDRIYPICPIANALIKLKDKKTFTKNDLNVFRAL

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