Scaffold Ga0208158_1014735

Overview

Basic Information

• Taxon OID: 3300025110
• Scaffold ID: Ga0208158_1014735
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2096
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.401
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006764	Metagenome	365	Y
F072430	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208158_10147353	F072430	GAGG	MEIWILVFIGYAIGFVIIAYFGISGTNDIINFKNEQYRQEQLTKSFERNKDNGNRL
Ga0208158_10147355	F006764	AGGGGG	MTDKVDSAIYIYDVEFNKIKTIKLKTFLKRVNHTLRNENQIYFALKNDAIKSREEDHAK