Scaffold Ga0208158_1000092

Overview

Basic Information

• Taxon OID: 3300025110
• Scaffold ID: Ga0208158_1000092
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42246
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (44.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.401
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006772	Metagenome	365	Y
F020003	Metagenome	226	Y
F056529	Metagenome	137	Y
F063605	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208158_100009215	F063605	AGGAGG	MTIRTDDIDDLLPCEYKDPWPPSDEEIEMLEWLAEQEELERSIPSAAERNPNLK
Ga0208158_100009218	F020003	N/A	MSTKLNGNKYSPQGSRVPTDLLPTAIRYEAARAVIFEDQGNFVRANECLRLKRHYERRAMEECISDPGPT
Ga0208158_100009228	F006772	N/A	MERLNKAIQLATTADLQRAAMFLEGAREVRKGSRRQRTNARSAQATAWKKKVDNSITW
Ga0208158_100009229	F056529	N/A	MATKHGNRVYIQVLLEPFRGELFMQEANAQGIKPSALIRQLVYDYLAENTKEETYCEALVNDKQKWQDAVDARLEGRARNRRSKIDQSDETIDASSSPM