Scaffold Ga0208553_1109691

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208553_1109691

Scaffold Ga0208553_1109691

Overview

Basic Information
Taxon OID	3300025109 Open in IMG/M
Scaffold ID	Ga0208553_1109691 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	633
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-11.499	Long. (^o)	-81.405	Alt. (m)		Depth (m)	210
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029400	Metagenome	188	Y
F084099	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208553_11096912	F084099	GAGG	MKIGDVVRMNHALTPERYGLGLVQKILRSREKSYRLVYHILWPDNTISCQFDNEIVLVGRVE
Ga0208553_11096913	F029400	N/A	DCGRSMKIGDLVTFCPESWGTPLEDRPLGVVVNMESLKNVHPMVTAIFPGDDIPYSSMIEDFEVVNENW

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