NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208553_1073546

Scaffold Ga0208553_1073546


Overview

Basic Information
Taxon OID3300025109 Open in IMG/M
Scaffold IDGa0208553_1073546 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)817
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-11.499Long. (o)-81.405Alt. (m)Depth (m)210
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003936Metagenome / Metatranscriptome461Y
F041444Metagenome160Y
F063764Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0208553_10735462F063764GGAGMAESLKYFRQKKGTWIWVYDMETNRRKKLELQLLLDRVNHTLRHENKMYFALEIERDKFREDCRT
Ga0208553_10735463F041444GAGMQSKQIEELKEQTKILFKVVDKLEQRISTLEKVIGKLQLKVGDVVLYIDKKGEQNG
Ga0208553_10735464F003936GAGVIEIFEIFWSAKIELRVLLLAVLIGSCFWYWQDYKRKQKEKQQARLNAIKTN

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