Scaffold Ga0208553_1035516

Overview

Basic Information

• Taxon OID: 3300025109
• Scaffold ID: Ga0208553_1035516
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1270
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED123 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 210

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002601	Metagenome / Metatranscriptome	544	Y
F021117	Metagenome	220	Y
F072243	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208553_10355163	F002601	AGAAGG	MIKLIVLSVLLNTGEMQAVIPDGTKIEARRRGGKSKGDRRRGGGGLR
Ga0208553_10355165	F072243	AGGAG	MGLLDFLTRPVNPHNQRFDEYDVFLAERNVKDVSYKDWYNYSDAYEYFRETGVDPYDSKSKHWDSKFKHPLSPERYIQDKENNKWFDTIQNKFVNEEAVAQQIVERLDYLKDMPLDGNKK
Ga0208553_10355166	F021117	AGGA	MEIKRDEMFQAARWLNLIVGLMNIYLYGQGGGYHLLGIGMLNIGVWAFTRGIHK