Scaffold Ga0208553_1031042

Overview

Basic Information

• Taxon OID: 3300025109
• Scaffold ID: Ga0208553_1031042
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1373
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 210

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000730	Metagenome / Metatranscriptome	917	Y
F001992	Metagenome	607	Y
F026590	Metagenome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208553_10310421	F026590	N/A	ERSTNDRLLYENTFQSGAANLTGTGTSLHIFQQDVVETILVRKGNPIDILIELVTVTTGTNTRQEGIVNLAPNIKTAVLKRFTPAGIALHLHADLSHADGVYKYTKNRVSMLGQ
Ga0208553_10310422	F000730	N/A	LVNEFIPPEIIPLVWFSCISVTVYVFFRVFSSTLREKFKQTNLSRRQAEKGGNTDGQIDDLITNAPRILHEIDKQIAEQKAQGVSDEQMKGLYQKKQLLSLVADNQEVINIIGKPIIKKLLGFVKAI
Ga0208553_10310423	F001992	AGG	MVVQKLLLQEGLKRTKQYSVSVLGYDFIGLAMRLGLFLTVGVLIQAYFTATIQGGSWLNSIAGFFNIKFPDTLPEWLTKLFTTGFSGIAFWQILQVTAILLVIVEYMQYDRMLKEKDQKPNATSQAVFLIIAIALSLMVFPQTIQKIKEMRILQQ