NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208553_1023832

Scaffold Ga0208553_1023832


Overview

Basic Information
Taxon OID3300025109 Open in IMG/M
Scaffold IDGa0208553_1023832 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1608
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-11.499Long. (o)-81.405Alt. (m)Depth (m)210
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016063Metagenome / Metatranscriptome250Y
F030569Metagenome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0208553_10238321F030569AGGMPKCQHCEEPNPEHWFYCRECGKRASKPKFTTNSFMRTEAGKRTDVEFNTISYEESFDKMNKSDKRWKG
Ga0208553_10238323F016063AGGAGGVYNKSLNTSSGSYNTKKRAIQNIDNGAAVTRTLTDAESGTLYLVDMSTVDNDVAITLPTASDSEGVWFDFCFTVACDDDADFSVTTGADGTDIYGYIVTGAANSTVDDVDGLSKITVDGSVAQTTEGMRLTFLCDGTNWHLSGYNPTAIGTVLVVESASA

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