NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208553_1019979

Scaffold Ga0208553_1019979


Overview

Basic Information
Taxon OID3300025109 Open in IMG/M
Scaffold IDGa0208553_1019979 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1778
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-11.499Long. (o)-81.405Alt. (m)Depth (m)210
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029465Metagenome188Y
F038267Metagenome166Y
F046314Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0208553_10199791F038267AGGGGGMSVRGFVNIDQYAWNKGKKTASICYPGMCGSMTSTIKWAHRYAKKDCDYALKILTLAIKEQDRVRNVIKRFNRRFG
Ga0208553_10199793F029465AGGMSLYNRLLKEKKRLGKFVLRTPRTGKELLDRRRWDRIMAILMRRYEYGIEDVMDSYRRQDQLDEIATIKRP
Ga0208553_10199795F046314AGGMDHMFALMEEVRVLVGRRDAHPHIMDAISTLNYRVEELRLELSVNKHTIDKMEEEKVDRMFNMNRGNPYNEGSGGDDD

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