Scaffold Ga0208553_1002009

Overview

Basic Information

• Taxon OID: 3300025109
• Scaffold ID: Ga0208553_1002009
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6739
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 210

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016597	Metagenome / Metatranscriptome	246	N
F023963	Metagenome / Metatranscriptome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208553_100200910	F023963	GGAG	MATPSNVHQKSIEFDEVNLFSIDKAVYDWFNTKHATNIKGRTVPVVFGGWERFAQMQDNRQDDSLNRMRDASGMLILPMISIRRGDVTYNTERFIFQQADGSPRVQISKRVAMSNFDANRRVPFDGPHMYSSSRRRSDAPVMEITTIPWPDFVNIPYTITFWSSYVRHANYFNDRIWQNAYPTDLTYKGYYFYAFIDSGTNENNEENYTDEERIIRSSFTMTVDGYLVKKTDASVTRTSTKMLMSESYMEEPKMETPGHKSIDEILAHDRARAPHQYPDPMPPGLGKVNYDSLNNSDFGLNKYNNPQQARVGGGKVDYSNLGDYGLNKYTEM
Ga0208553_10020099	F016597	GAG	MAGNHGRFPFGSTTGDADYGLFFTPREMELFDNYNEELLGIVAQTGVTYWRIEPDSSDPNSIYGESEIKVTRDPVSLYCWVMLDEPETETNAFTVDVRRRIELYMHKDGLTERDIVPRMGDFVGYDNQYFEILRAGVPNFVYSYPQTKLGVIVRCLSVREGVFDPDRDFVNKEYVGDSETPY