Scaffold Ga0208553_1001845

Overview

Basic Information

• Taxon OID: 3300025109
• Scaffold ID: Ga0208553_1001845
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7050
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 210

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002566	Metagenome / Metatranscriptome	547	Y
F030560	Metagenome / Metatranscriptome	185	Y
F033758	Metagenome	176	N
F042378	Metagenome	158	Y
F060342	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208553_100184510	F042378	GAGG	MDISEAIAEVQQPRSRYQLIHFVIGQHDTPEMRFYQLCLELQDMGYKLRMARLGVRKAEVEIGRLLETGDELDAIEAEEKQVGLEQTLVVMRGAERELAVLGDLFDESQKFTRDEIEHAQPEYWHARLTRQTNLQLMAGGVQWAQLDSMRQAGILEEAIAAHQPHPENGHQELAP
Ga0208553_100184513	F030560	AGGAGG	MAQQTFSGVPGAFAAGAVLTAAEQELIRDYMIAQIKEGMTGDTGEILPMIMDLTNNRIVLDSGGLEFSDGSLQTVAASSDPADMNLIVGLEMFL
Ga0208553_100184514	F060342	N/A	DRDIDTSTITMAAETVAGLQTATYTARLAQSEDGAIYCRHGLPGGAAAAATKRGNVLTYKKRYAPSTPTGLTFIGSGGNSTQPPMTGLKTTYGSEILFNRGVYAGSTGNDQIVNDTANQTLYGIRTIVRRNLLNLNDADVLSAATNFVLLYSTPALRVSQLTCMPRSMTEAQAEAVAKLGMWDGIQVSFTPVGADTAQQRIVRIEGVTHDITPMGWEMRLNCSGSGDQQYFILDSTIDGILNTNKMAP
Ga0208553_10018454	F033758	AGGGGG	MEARTLDDSTTVAFPEPSLWDQTGGLVSDAHPLTSHRAATTVKSGTQKAQILLALRAVWPDRGLTGYDLSTRGLVVNGAGLPISANQACTRLLELRDAGLVDFQREFPAGPIVEAATTPGNTGQVHTLTAYGVSKASAIPA
Ga0208553_10018459	F002566	AGGAG	VTYIKWKLSDGTWGTGPEETIADRGGHADASWAVDAAGYRIGYLTENCGLTDLGTWDVTEQTEAQALTFCQALYADAEVLPDGRISSPPPPDNDV