Scaffold Ga0208793_1025956

Overview

Basic Information

• Taxon OID: 3300025108
• Scaffold ID: Ga0208793_1025956
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2002
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012117	Metagenome / Metatranscriptome	283	N
F013088	Metagenome / Metatranscriptome	274	Y
F018155	Metagenome / Metatranscriptome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208793_10259561	F013088	N/A	MDDKTKKALWIPEELHKEIKVFAITNNMNIESATQLLLKLGMCSYKAEK
Ga0208793_10259562	F018155	GAG	MGQNKAAVEKRRKELEAERLDQKIDYYYFQKGAGNHYREIQYQSGRVVRTDYNA
Ga0208793_10259566	F012117	N/A	MEKNMVDILGGMSSSNESQQVYLAFKTSHQQFFANGETPVDFQYLQLDPATFKSGWGRYTKADGFEYAWDDKFGVVNPKPADDYKRAFSAWVMPQGAQHAYLWQRFTVAESRAFNTILGGFWNQMDASADSLPVVKYEGSKPVQVGMGTSSELSFSFAKFAPRADGFVIPQWYIDQEAPVEDTFKSPNDGLAEKVQEMVDKNELSDDDIPF